common.f90 File Reference

Go to the source code of this file.

Data Types
type	common::profile_t
	Container for a profile, e.g. v(x) More...
type	common::histogram_t
	Container for a histogram, e.g. p(x) More...
type	common::timer_t
type	common::timer_pointer_t
type	common::timer_list_t
interface	common::switch
type	common::args_t
	Container for the standard command-line arguments to RMPCDMD. More...
type	common::alist_t
	Appendable lists of double precision data. More...
type	common::enzyme_kinetics_t
	Container for the list of times for enzymatic kinetics. More...

Modules
module	common
	Utility routines.

Functions/Subroutines
pure double precision function, dimension(3), public	common::rel_pos (x, y, L)
	Return x-y distance with minimum image convention. More...
subroutine	common::profile_init (this, xmin, xmax, n)
subroutine	common::profile_bin (this, x, value)
subroutine	common::profile_reset (this)
subroutine	common::profile_norm (this)
subroutine	common::histogram_init (this, xmin, xmax, n, n_species)
subroutine	common::histogram_bin (this, x, s)
subroutine	common::switch_d2 (p1, p2)
subroutine	common::switch_i1 (p1, p2)
subroutine	common::switch_i2 (p1, p2)
character(len=max_path_length) function, public	common::get_input_filename ()
type(args_t) function, public	common::get_input_args ()
subroutine	common::timer_init (this, name, system_name)
subroutine	common::tic (this)
subroutine	common::tac (this)
subroutine	common::timer_list_init (this, n)
subroutine	common::timer_list_append (this, timer_target)
subroutine	common::timer_list_write (this, group, total_out)
pure double precision function, dimension(3), public	common::cross (x1, x2)
subroutine	common::alist_init (this, block_size)
subroutine	common::alist_append (this, value)
character(len=:) function, allocatable, public	common::numbered_string (base_string, index, length)

Variables
integer, parameter	common::max_path_length = 255
double precision, parameter, public	common::pi = 4*atan(1.d0)
integer, parameter, public	common::reac_bit = 1
integer, parameter, public	common::md_bit = 2
integer, parameter, public	common::wall_bit = 3
integer, parameter, public	common::past_md_bit = 4
integer, parameter, public	common::outbound_bit = 5
integer, parameter, public	common::catalyzed_bit = 6
integer, parameter, public	common::enzyme_region_bit = 7
integer, parameter, public	common::reac_mask = ibset(0, REAC_BIT)
integer, parameter, public	common::md_mask = ibset(0, MD_BIT)
integer, parameter, public	common::wall_mask = ibset(0, WALL_BIT)
integer, parameter, public	common::catalyzed_mask = ibset(0, CATALYZED_BIT)
integer, parameter, public	common::enzyme_region_mask = ibset(0, ENZYME_REGION_BIT)