Table of contentsΒΆ

  • RMPCDMD
  • Algorithms
    • Quaternion velocity Verlet
    • MPCD
    • Molecular Dynamics
    • Boundary conditions
    • Convenience routines
  • Design
    • General principles
    • Storage of cell and particle data
    • Programming language
    • Random numbers
  • Install
    • Requirements
    • Building on Linux
    • Building on OS X
    • Building on Windows
    • HDF5
    • Python
  • Run the code
    • rmpcdmd run
    • rmpcdmd plot
    • rmpcdmd seeder
    • rmpcdmd timers
    • rmpcdmd values
    • experiments/ directory
  • Programs
    • Configuration files
    • single_dimer_pbc
    • chemotactic_cell
    • single_body
    • poiseuille_flow
    • single_sphere_thermo_trap
    • n_colloids_pbc
    • three_bead_enzyme
  • Tutorial
    • Introduction
    • Preliminary remarks
    • Literature
    • The MPCD fluid and Molecular Dynamics
    • The dimer nanomotor
    • The Janus nanomotor
  • Bibliography

Table of Contents

  • RMPCDMD
  • Algorithms
  • Design
  • Install
  • Run the code
  • Programs
  • Tutorial
  • Bibliography

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